Last updated: 2022-08-15

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Rmd 9b41498 noah-padgett 2021-12-19 updated survival aanalyses
html 9b41498 noah-padgett 2021-12-19 updated survival aanalyses
html 2072df5 noah-padgett 2021-04-22 fixed the issue picrust analysis code
Rmd ea63e54 noah-padgett 2021-04-15 updated picrust results
html ea63e54 noah-padgett 2021-04-15 updated picrust results
Rmd 929ae0b noah-padgett 2021-03-14 updated homepage
html 929ae0b noah-padgett 2021-03-14 updated homepage
Rmd fe971b9 noah-padgett 2021-02-13 violin plot scale fixed
html fe971b9 noah-padgett 2021-02-13 violin plot scale fixed
Rmd 285a2fb noah-padgett 2021-02-10 updated violion plots
html 285a2fb noah-padgett 2021-02-10 updated violion plots
Rmd b9a498d noah-padgett 2021-01-26 fixed issue with subsetting
html b9a498d noah-padgett 2021-01-26 fixed issue with subsetting
Rmd 6585907 noah-padgett 2021-01-21 updated figures with dendrogram
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Rmd cf91029 noah-padgett 2020-12-02 updated analyses
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Rmd 9937a7e noah-padgett 2020-11-05 new abundance data results
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Welcome to our research website.

Supplemental Figure 2 Parts

Data Pre-Processing

*NCI-UMD Data Process

*TCGA Data Process

*Sample IDs with Abundances

*Testing replication

*Waterfall Plots

*RNAscope test

Abundance Data

Violin plots with abundance of each bacteria across samples with Barretts history.

*Violin plots for bacterial abundance by Barretts samples

The following pages give a variety of heatmaps w/ dendrograms that help describe the differences in OTU abundance across groups.

*Genera Level Heatmaps with Dendrograms

*Species Level Heatmaps with Dendrograms

The following page helps describe the relationship between Fuso (and other OTUs) and tumor stage.

*Ordered Logit Model Results

Analyses

Bag-of-Genes Analyses

*PICRUSt Results

Results Stratified by Taxa

*PICRUSt Results - Fusobacterium nucleatum

*PICRUSt Results - Streptococcus sanguinis

*PICRUSt Results - Campylobacter concisus

*PICRUSt Results - Prevotella spp. (genus level only)

Survival Analysis

*Survival Analysis Results